This overview will be updated continuously. Last update: 25-10-2023 To know which inputs can be chosen per analysis, see this article
Analysis & interactive visualizations in the UniApp
Below overview shows the (expected) available analysis algorithms & interactive visualization options in the UniApp. It also lists if it can be used as an input for Meta analysis and for which technology types
| Status | Analysis | Package(s) | Input for meta analysis? | Micro Array | RNAseq | SC-RNAseq | Spatial RNAseq | Prote omics | Metabol omics | Meta data |
|---|---|---|---|---|---|---|---|---|---|---|
| Active | Experimental design | Super pivot table | Y | Y | Y | Y | Y | Y | Y | Y |
| Active | Data pretreatment | algorithm varies per technology | Y | Y | Y | Y | Y | Y | Y | Y |
| Active | Gene association analysis | Unicle propriatary | Y | Y | Y | Y | Y | Y | Y | N |
| Active* | Gene regulatory network | Unicle propriatary | N | Y | Y | Y | Y | Y | Y | N |
| Active | Dimension reduction | PCA | N | Y | Y | Y | Y | Y | Y | N |
| Active | Dimension reduction | tSNE | N | Y | Y | Y | Y | Y | Y | N |
| Active | Dimension reduction | UMAP | N | Y | Y | Y | Y | Y | Y | N |
| Active | Clustering | Hyrarchical clustering | N | Y | Y | Y | Y | Y | Y | N |
| Active | Clustering | K-means clustering | N | Y | Y | Y | Y | Y | Y | N |
| Active | Clustering | Louvain clustering | N | Y | Y | Y | Y | Y | Y | N |
| Active | Cluster marker genes | Unicle propriatary | Y | Y | Y | Y | Y | Y | Y | N |
| Active | Differential analysis | Limma | Y | Y | Y | Y | Y | Y | Y | N |
| Active | Differential analysis | T-test | Y | Y | Y | Y | Y | Y | Y | N |
| Active | Differential analysis | Wilcoxon test | Y | Y | Y | Y | Y | Y | Y | N |
| Active | Differential analysis | MAST | Y | N | N | Y | N | N | N | N |
| Active | Gene set enrichment | Competitive GSEA | Y | Y | Y | Y | Y | Y | N | N |
| Active | Feature heatmap | HeatmapLY | N | Y | Y | Y | Y | Y | Y | N |
| Active | Correlation heatmap | HeatmapLY | N | Y | Y | Y | Y | Y | Y | N |
| Active | Brute force | Unicle propriatary | N | Y | Y | Y | Y | Y | Y | N |
| Active* | Gene set association | Unicle partnership | Y | N | N | Y | N | N | N | N |
| Active | Cell-cell interaction analysis | CellphoneDB | N | N | N | Y | N | N | N | N |
| Active | Gene entropy analysis | SCENT | Y | N | N | Y | N | N | N | N |
| Active | Rank-based meta-analysis | Unicle propriatary | Y | Y | Y | Y | Y | Y | Y | N |
| Active | Rule-based meta-analysis | Unicle propriatary | Y | Y | Y | Y | Y | Y | Y | N |
| Active | Gene metadata table | Genecards | Y (partially) | n/a | n/a | n/a | n/a | n/a | n/a | n/a |
| Active | Super pivot table | Unicle propriatary | N | Y | Y | Y | Y | Y | Y | Y |
| Active* | Feature engineering | GSVA | N | Y | Y | N | N | Y | N | N |
| Active* | Spatial expression | Seurat | N | N | N | N | Y | N | N | N |
| Active* | Gene lolliplot | Unicle propriatary | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a |
| Active* | Pathology slide | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a | n/a |
| Long list | Feature engineering | Modulescore | N | N | N | Y | Y | N | N | N |
| Long list | Trajectory interference | tbd | tbd | N | N | Y | N | N | N | N |
| Long list | Gene entropy analysis | RNEntropy | N | N | Y | N | N | N | N | N |
Legend:
* are premium functionalities, contact us for more information
Long list: Expected future functionalities
Was this article helpful?
That’s Great!
Thank you for your feedback
Sorry! We couldn't be helpful
Thank you for your feedback
Feedback sent
We appreciate your effort and will try to fix the article